Chocolate Cheesecake Cupcakes: 3 Secrets You Need to Try

Creamy, chocolaty, and just the right size to hold in your hand — that’s the irresistible charm of Chocolate Cheesecake Cupcakes. Imagine biting into a fluffy chocolate cupcake, only to discover a rich, tangy cheesecake center hiding inside. It’s a flavor surprise that keeps you coming back for more.

Here’s a fun fact: cheesecake itself has been around since ancient Greece, and chocolate cupcakes became popular in America in the early 20th century. Put them together, and you’ve got a dessert that bridges centuries of indulgence in one bite-sized treat!

Why should you try these cupcakes? They’re quick to make, don’t require fancy equipment, and are perfect for both weeknight desserts and party trays. Even kids love helping with this recipe, making it a fun family baking project. Plus, they store beautifully, so you can bake ahead for holidays or gatherings.

If you’ve tried my Blueberry Cinnamon Rolls, you already know how much I love recipes that bring comfort with a little twist. These cupcakes do the same — familiar yet delightfully surprising.

So grab your mixing bowls, because once you try these, you’ll wonder how you ever lived without them.

Want more dessert inspiration? Check out our Black Forest Berry Cheesecake and Yellow Velvet Cake Recipe for another irresistible treat!

What is Chocolate Cheesecake Cupcakes?

The name says it all, right? Chocolate Cheesecake Cupcakes are simply cupcakes that decided ordinary wasn’t enough. Instead of being satisfied with just chocolate cake, they decided to sneak in a creamy cheesecake filling right in the middle. Why settle for one dessert when you can have two?

I like to think of these cupcakes as overachievers. They’re the ones who show up to the party with not just frosting, but a rich surprise center that makes everyone say, “Wait, how did you do that?” And you know the saying, the way to a man’s heart is through his stomach — well, these little gems might just work their magic on everyone at the table.

Ready to bake a batch? Trust me, once you try them, you’ll be hooked!

Why You’ll Love This Chocolate Cheesecake Cupcakes

Here’s why these cupcakes deserve a permanent spot in your recipe box:

The Main Highlight: Two Desserts in One
These cupcakes combine the best of both worlds — soft, moist chocolate cake and a creamy cheesecake filling. Every bite feels like a mini celebration.
Budget-Friendly Baking
Instead of buying bakery cupcakes that can cost a fortune, making Chocolate Cheesecake Cupcakes at home is cost-effective and just as delicious. You’ll save money and impress your guests at the same time.
Toppings That Elevate Flavor
Add a drizzle of chocolate ganache, a sprinkle of cocoa powder, or even fresh berries on top. These small touches transform the cupcakes from simple to show-stopping.

If you enjoyed my Cheesecake Fruit Salad Roll-Ups, you’ll adore these cupcakes. They’re another creative way to enjoy the creamy richness of cheesecake in a fun, handheld form. Go ahead — try them and share the joy with friends and family.

How to Make Chocolate Cheesecake Cupcakes

Quick Overview

This recipe is surprisingly easy! You’ll make a chocolate cupcake batter, whip up a simple cheesecake filling, and bake everything together. Prep time takes about 20 minutes, and baking time is just 25 minutes. That means you can have freshly baked Chocolate Cheesecake Cupcakes on the table in under an hour!

Key Ingredients for Chocolate Cheesecake Cupcakes

For the Chocolate Cupcakes:

1 cup all-purpose flour
1 cup granulated sugar
½ cup unsweetened cocoa powder
1 tsp baking soda
½ tsp salt
1 cup warm water
⅓ cup vegetable oil
1 tbsp white vinegar
1 tsp vanilla extract

For the Cheesecake Filling:

8 oz cream cheese (softened)
⅓ cup sugar
1 egg
½ tsp vanilla extract
½ cup mini chocolate chips

Step-by-Step Instructions

Preheat and Prepare
Preheat your oven to 350°F (175°C). Line a muffin tin with cupcake liners.
Mix Dry Ingredients
In a large bowl, whisk together flour, sugar, cocoa powder, baking soda, and salt.
Add Wet Ingredients
Stir in warm water, oil, vinegar, and vanilla until the batter is smooth. The mixture will be slightly thin — that’s perfect.
Prepare Cheesecake Filling
In another bowl, beat cream cheese until smooth. Add sugar, egg, and vanilla, then mix until creamy. Stir in chocolate chips.
Fill the Liners
Spoon the chocolate batter halfway into each cupcake liner. Add a spoonful of cheesecake filling on top.
Bake
Bake for 25 minutes, or until cupcakes are set and the cheesecake tops look slightly golden.
Cool and Serve
Let them cool in the pan for 5 minutes, then transfer to a wire rack. Serve warm or chilled.

What to Serve Chocolate Cheesecake Cupcakes With

These cupcakes are versatile and pair wonderfully with:

Hot Beverages: Coffee, espresso, or hot cocoa for cozy vibes.
Cold Treats: A scoop of vanilla ice cream or whipped cream.
Fruit Accents: Fresh strawberries, raspberries, or a berry compote add a tart contrast to the rich cupcakes.

Top Tips for Perfecting Chocolate Cheesecake Cupcakes

Room Temperature Cream Cheese: Ensures a smooth, lump-free filling.
Don’t Overfill: Only fill cupcake liners halfway to prevent overflow.
Add a Twist: Sprinkle sea salt or drizzle caramel for a gourmet touch.
Chill Before Serving: Cooling enhances the cheesecake texture.
Mix-Ins: Try white chocolate chips or crushed cookies in the filling.

Storing and Reheating Tips

Room Temperature: Keep in an airtight container for up to 2 days.
Refrigeration: Store in the fridge for 5 days to keep the cheesecake fresh.
Freezing: Wrap each cupcake individually and freeze for up to 2 months. Thaw overnight in the fridge before serving.
Reheating: While they’re best served chilled, you can microwave for 10–15 seconds if you prefer them warm.

FAQ About Chocolate Cheesecake Cupcakes

Q: Can I make Chocolate Cheesecake Cupcakes ahead of time?
A: Yes! They store beautifully in the fridge and taste even better the next day.

Q: Can I use boxed cake mix for the chocolate part?
A: Absolutely! A chocolate cake mix works if you’re short on time.

Q: How do I prevent the cheesecake from cracking?
A: Don’t overbake. Once the tops are just set, remove them from the oven.

Q: Can I make these without eggs?
A: Yes! Use an egg substitute like flaxseed egg in the filling.

Chocolate Cheesecake Cupcakes are the perfect marriage of two beloved desserts. With their moist chocolate base and creamy cheesecake filling, they’re as indulgent as they are easy to make. Best of all, they’re versatile — perfect for holidays, parties, or just a cozy night in.

So go ahead, try these cupcakes and unlock the three secrets to baking them perfectly every time. One bite, and you’ll see why this recipe is about to become your new favorite.